Methods for Creating Doubled Haploid Plants

ABSTRACT

Provided are methods for increasing the efficiency of creating doubled haploid plants by increasing the number of chances of forming a double haploid seed through treatment of a monocot plant with a plant growth regulator. In certain embodiments, maize plants are produced that comprise multiple co-dominant ears. Also provided are plants comprising the potential to generate increased numbers of doubled haploid offspring.

BACKGROUND

The evolution and domestication of plants has generally followed acommon pattern or “domestication syndrome” that distinguishes crops fromtheir wild progenitors. One common domestication syndrome feature amongcrops arose from long-term selection for increased apical dominance,which is characterized by relatively more robust growth of a centralstem and its buds and flowers in comparison to the growth of side stemsand axillary buds, which has resulting in fewer and larger fruits perplant. The selection for apical dominance is considered an importantsymptom of domestication in many species, including the cereal crops ofrice, wheat, barley and maize, as well as fruit crops like tomato.

A critical challenge during the domestication of crop plants was toimprove the harvestability of the crop as compared to its progenitor. Inunfavorable environments, wild plants often flower and mature rapidly;producing smaller numbers of branches, inflorescences, flowers and seedsin order to increase the likelihood of producing at least one offspringto continue the life cycle. In favorable environments, wild plantsmaximize the probability of successful reproduction by sequentiallyproducing more branches, inflorescences, flowers and seeds over time.The latter strategy is not optimal for a crop as it is more efficient toharvest a fewer but larger fruit or inflorescences that maturesynchronously from plant to plant which permits a single harvest at anoptimal time of fruit or inflorescence maturation. Thus, diverse cropshave been selected to produce smaller numbers of larger seeds, fruits orinflorescences on the main stem as a means of improving harvestability.

Perhaps the most striking and well-studied alteration in plantarchitecture was brought about by the domestication of maize. Byselecting for traits that improve yield and mechanical harvestability,humans have transformed the progenitor of maize from a bushy, shrub-likeancestor with multiple elongated lateral branches tipped by male orfemale florescences into today's crop comprising a single, erect mainstem with only two or three relatively abbreviated lateral branches,each terminating in a single female flower (ear). Today it is generallyaccepted that selecting for apical dominance in maize not only improvesoverall yield in ideal growing conditions, but it also makes thelogistics of coordinating flowering times among and between lines mucheasier and streamlines field maintenance and mechanical harvestability.

The mechanism of apical dominance in maize involves the regulation ofhormones such as auxin, which is produced by the apical meristem. As theprimary ear begins to mature, greater amounts of auxin are produced bythe apical meristem. The auxin is carried from the apical meristem downthe plant and suppresses development of lower ears, resulting insecondary ears that are less likely to nick well or produce viable seed.

Haploid sporophyte plants contain a gametic chromosome number (n) andcan originate spontaneously or through artificial induction. Haploidstend to be less vigorous and less fertile than a sporophyte of similargenotype with the zygotic chromosome number (2n), and so are of limiteddirect benefit to researchers seeking to improve plant genetics.

Although spontaneous chromosome doubling does occur, the frequency is solow (typically less than 5%), that researchers attempting to createdoubled haploids plants (“DH plants”) often subject haploid plants totreatments that promote chromosome doubling. Haploid plant seedlingssubjected to a chromosome doubling treatment can produce haploid eggand/or sperm, and if these plants are successfully selfed, the zygoticchromosome number can be recovered in the offspring, thus restoring thevigor and fertility expected of a 2n sporophyte.

During chromosome doubling, each homologue is replicated to create asubstantially identical copy of the original and thus the entire genomeof a DH plant is usually considered homozygous at each locus. Thisprocess can create completely homozygous and homogenous lines in fewergenerations than traditional backcrossing, thereby improving selectionefficacy, reducing the number and length of breeding cycles, andconsuming fewer resources.

The likelihood of generating large numbers of doubled haploid offspringfrom a given haploid plant using methods currently known in the art isso low, however, that it severely reduces the advantages ofincorporating them on a large scale in a competitive breeding program.As far back as the 1950s researchers have been attempting to improvedoubling rates in plants and have developed techniques for over 250 cropspecies. However, even the best methods described reliably yielddoubling rates of only 12% or less and typically depend on theapplication of the anti-microtubule drug colchicine, which is toxic toplants at the concentrations required. The effects are also highlygenotype specific.

Furthermore, current doubling methods are labor intensive and oftenrequire that plants are handled several times during treatment, reducingtheir survival rate. Haploid plants often become so fragile duringcolchicine treatment that even if they live through it and aresuccessfully doubled, they do not survive the subsequent handling anddownstream processing steps necessary to transplant them to a field,greenhouse, or other growth conditions where they can recover andeventually grow to produce seed. Thus, plant breeders and researcherswill typically use a gauge that characterizes both the likelihood that ahaploid plant is doubled as well as the likelihood that the plantsurvives to produce doubled haploid seed when comparing the overalleffectiveness of one doubling method to another.

SUMMARY

Provided herein are methods for increasing the number inflorescences amonocot plant produces. In certain embodiments, methods of increasingthe number inflorescences a monocot plant produces comprise contactingthe monocot plant with a plant growth regulator to produce a greaternumber of inflorescence than a control plant which was not contactedwith the plant growth regulator.

Certain aspects provide for methods of producing co-dominant ears on amaize plant. In certain embodiments, the methods comprise contacting amaize plant with a plant growth regulator, such that the maize plantproduces co-dominant ears. In certain embodiments, the maize plantproduces at least two co-dominant ears. In certain embodiments, themaize plant produces three, four, five, or more co-dominant ears.

In certain embodiments of any of the methods disclosed herein, the plantcan be a haploid plant.

Certain aspects provide for methods of improving the number of DH₁ seedsobtained or harvested from a DH₀ maize plant. Certain aspects providefor methods of increasing the number of DH₁ seeds produced by a DH₀maize plant. Certain aspects provide for methods of producingco-dominant ears on a DH₀ maize plant. In certain embodiments, any ofsuch methods comprise contacting a DH₀ maize plant with a plant growthregulator at any one of developmental stage V4, V5, V6, V7, V8, V9, orV10 and contacting the DH₀ maize plant with a chromosome doubling agentat any stage of its life cycle. In certain embodiments, any of suchmethods comprise contacting a DH₀ maize plant with the chromosomedoubling agent at any one of developmental stage V4, V5, V6, V7, V8, V9,or V10. In certain embodiments, such methods produce a DH₀ maize plantthat produces at least one DH₁ maize seed and at least two co-dominantears. In certain embodiments the total number of DH₁ maize seedsproduced by the DH₀ maize plant with at least two co-dominant ears isgreater than the number of DH₁ maize seeds produced by control DH₀ maizeplants that exhibit a single dominant ear. In certain embodiments, theDH₀ maize plant produces a first co-dominant ear and a secondco-dominant ear and the second co-dominant ear produces more DH₁ maizeseeds than the first co-dominant ear. In certain embodiments, the DH₀maize plant produces a first co-dominant ear, a second co-dominant ear,and a third co-dominant ear, and the third co-dominant ear produces moreDH₁ maize seeds than the first co-dominant ear. In certain embodiments,the methods further comprise genotyping the DH₀ maize plant prior tocontacting the DH₀ maize plant with the plant growth regulator or thechromosome doubling agent. This can be used to allow for informationabout the DH₀ maize plant to be used to select which DH₀ maize plant orplants to contact or in what manner to contact them to achieve desiredresults. In certain embodiments, the methods further comprise obtainingDH₁ maize seeds from the DH₀ maize plant. In certain embodiments, themethods further comprise genotyping the DH₁ maize seeds obtained fromthe DH₀ maize plant or genotyping a plant grown from the DH₁ maizeseeds. Information about the DH₁ maize seeds or plants can be used todecide which seed(s) or plant(s) to carry forward in a breeding program.Thus, in certain embodiments, the methods further comprise growing a DH₁maize seed selected based on the genotyping. In certain embodiments, themethods further comprise crossing a DH₁ maize plant grown from selectedseed with another plant. In certain embodiments, any of such methodsresult in a DE₄ doubling efficiency of at least about 15%, results in aDE₂₀ doubling efficiency of at least about 15%, results in a DE₃₀doubling efficiency of at least about 15%, and/or results in a DE₅₀doubling efficiency of at least about 15%.

In certain embodiments of any of the methods herein, a plant iscontacted with the plant growth regulator by drenching, gassing,injecting, or spraying. In certain embodiments, the plant growthregulator is a plant hormone, gibberellic acid inhibitor, cytokinin, orany combination thereof. In certain embodiments, the plant growthregulator is a gibberellic acid inhibitor that is selected from thegroup comprising chlormequat-CL, mepiquat-CL, AMO-1618, clorphonium-C1,tetcylacis, ancymidol, flurprimidol, paclobutrazol, uniconazole-P,inabenfide, prohexadione-CA, trinexapac-ethyl, daminozide, exo-16,17-,and dihydro-GA5-13-acetate.

In certain embodiments, the DH₀ maize plant is contacted with achromosome doubling agent, such as colchicine, before it is contactedwith the plant growth regulator. In certain other embodiments, the DH₀maize plant is contacted with a chromosome doubling agent after it iscontacted with the plant growth regulator. In certain embodiments, theDH₀ maize plant is contacted with the chromosome doubling agent within 1minute, 5 minutes, 15 minutes, 30 minutes, 1 hour, 2 hours, 3 hours, 6hours, 12 hours, or 24 hours before or after contact with the plantgrowth regulator. In certain embodiments, the chromosome doubling agentand the plant growth regulator are contacted with the DH₀ maize plant atthe same time.

In certain embodiments, a maize plant is contacted with the plant growthregulator at developmental stage V4, V5, or V6. In certain embodiments,a maize plant is contacted with the plant growth regulator atdevelopmental stage V6, V7, V8, V9, or V10.

In certain embodiments, the method results in three or more, four ormore, or five or more co-dominant ears produced on a single maize plant.Certain embodiments provide for an elite haploid maize plant comprisingat least two co-dominant ears. In certain embodiments, at least one ofthe co-dominant ears comprises a doubled haploid embryo. Certainembodiments provide for a DH₀ maize plant comprising at least twoco-dominant ears, wherein at least one of the co-dominant ears comprisesa doubled haploid embryo. Certain embodiments provide a maize plantproduced by any of the methods described herein.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 shows ears classified by their population pedigree, position onthe maize stalk, and number of DH₁ seed they produced.

FIG. 2 shows eight numbered maize co-dominant ears growing from a singleplant that was treated with a plant growth regulator.

FIG. 3 shows the average total number of seeds produced from tillersderived from the same mother plant that was subjected to a tillerinduction treatment.

FIG. 4 shows that plants treated with PGR produced more seeds per plant.

FIG. 5 shows that across lines, PGR-treated plants produced more seedsper plant.

DETAILED DESCRIPTION

Provided herein are methods of inducing or promoting the development ofaxillary meristems or additional side shoots or additionalinflorescences in a crop plant. In certain aspects, this is done for thepurpose of improving the efficiency of doubled haploid (“DH”) plantproduction.

It is to be noted that the term “a” or “an” entity refers to one or moreof that entity; for example, “a plant,” is understood to represent oneor more plants. As such, the terms “a” (or “an”), “one or more,” and “atleast one” can be used interchangeably herein.

Furthermore, “and/or” where used herein is to be taken as specificdisclosure of each of the two specified features or components with orwithout the other. Thus, the term and/or” as used in a phrase such as “Aand/or B” herein is intended to include “A and B,” “A or B,” “A”(alone), and “B” (alone). Likewise, the term “and/or” as used in aphrase such as “A, B, and/or C” is intended to encompass each of thefollowing embodiments: A, B, and C; A, B, or C; A or C; A or B; B or C;A and C; A and B; B and C; A (alone); B (alone); and C (alone).

Unless defined otherwise, technical and scientific terms used hereinhave the same meaning as commonly understood by one of ordinary skill inthe art to which this disclosure is related. Units, prefixes, andsymbols are denoted in their Système International de Unites (SI)accepted form. Numeric ranges are inclusive of the numbers defining therange.

The headings provided herein are solely for ease of reference and arenot limitations of the various aspects or aspects of the disclosure,which can be had by reference to the specification as a whole.Accordingly, the terms defined immediately below are more fully definedby reference to the specification in its entirety.

Definitions

A used herein, a “plant” refers to a whole monocot plant, any partthereof, or a cell or tissue culture derived from a monocot plant,comprising any of: whole plants, plant components or organs (e.g.,leaves, stems, roots, etc,), plant tissues, seeds, plant cells, and/orprogeny of the same. A plant cell is a biological cell of a plant, takenfrom a monocot plant or derived through culture from a cell taken from amonocot plant.

As used herein, a “population of plants” or “plant population” refers toa set comprising any number, including one, of individuals, objects, ordata from which samples are taken for evaluation, e.g. estimating QTLeffects. Most commonly, the terms relate to a breeding population ofplants from which members are selected and crossed to produce progeny ina breeding program. A population of plants can include the progeny of asingle breeding cross or a plurality of breeding crosses, and can beeither actual plants or plant derived material, or in silicorepresentations of the plants. The population members need not beidentical to the population members selected for use in subsequentcycles of analyses or those ultimately selected to obtain final progenyplants. Often, a plant population is derived from a single biparentalcross, but may also derive from two or more crosses between the same ordifferent parents. Although a population of plants may comprise anynumber of individuals, those of skill in the art will recognize thatplant breeders commonly use population sizes ranging from one or twohundred individuals to several thousand, and that the highest performing5-20% of a population is what is commonly selected to be used insubsequent crosses in order to improve the performance of subsequentgenerations of the population.

As used herein, the term “genetic element” refers to either arecombinant DNA construct (commonly referred to as a “transgene”) thathas been inserted into the maize genome, a nucleotide sequence, or agenetic locus of a plant genome.

As use herein, the terms “promoting” and “inducing” are usedinterchangeably to mean either promoting, for example, the developmentof axillary buds from preexisting buds and inducing, for example, theformation of axillary buds de novo.

As used herein, the term “non-naturally occurring” substance,composition, entity, and/or any combination of substances, compositions,or entities, or any grammatical variants thereof, is a conditional termthat explicitly excludes, but only excludes, those forms of thesubstance, composition, entity, and/or any combination of substances,compositions, or entities that are well-understood by persons ofordinary skill in the art as being “naturally-occurring,” or that are,or might be at any time, determined or interpreted by a judge or anadministrative or judicial body to be, “naturally-occurring.”

As used herein, the terms “flower” and “inflorescence” are usedinterchangeably.

As used herein, the terms “maize” and “corn” are used interchangeably.

As used herein, the term “elite,” “elite plant,” and the like describesa group, germplasm, or population of at least one crop plant that hasresulted from human-directed breeding and selection for superioragronomic performance. An “elite population” is an assortment of eliteindividuals or lines that can be used to represent the state of the artin terms of agronomically superior genotypes of a given crop species,such as maize. Similarly, an “elite germplasm” or “elite strain ofgermplasm” is an agronomically superior germplasm, typically derivedfrom and/or capable of giving rise to a plant with superior agronomicperformance, such as an existing or newly developed elite line of maize.In contrast, an “exotic plant,” “exotic line,” or “exotic germplasm” isa plant, line, or germplasm derived from a plant not belonging to anavailable elite line or strain of germplasm. In the context of a crossbetween two plants or lines of germplasm, an exotic germplasm is notclosely related by descent to the elite germplasm with which it iscrossed. Most commonly, the exotic germplasm is not derived from anyknown elite line of a crop, but rather is selected to introduce geneticelements (typically desired alleles) into a breeding program.

Maize plants tend to produce a single dominate, or primary, ear thatdevelops fastest and most completely. Additional ears sometimes formlower down the stalk from the dominant ear (the secondary ear is thenext ear down from the primary ear, the tertiary ear next lowest, and soon—all of which can be referred to collectively as secondary ears), buttheir development is typically delayed with respect to the dominant ear.Because the development of additional, or non-dominant, ears is usuallydelayed, the dominant ear is typically the only one that nicks well.

As used herein, the term “co-dominant ear(s)” refers to ears on a maizeplant that mature at a similar rate/time such that they produce silksreceptive to pollen germination in an overlapping timeframe. A plantwith co-dominant ears will have at least two co-dominant ears.Co-dominant ears can be numbered by their position on the stalk, i.e.,the top co-dominant ear is the first co-dominant ear, the nextco-dominant ear down from the first is the second co-dominant ear, thethird co-dominant ear is the next lowest, and so on.

As used herein, a control plant (e.g., monocot control plant, maizecontrol plant, etc.), is a plant (or population of plants) recognized ashaving a representative phenotype (e.g., number of inflorescences,number of tillers, number of ears, number of kernels/seeds, height,biomass, and the like), of a plant that has not been treated with aplant growth regulator but that is in other respects such as geneticmakeup and growing conditions comparable to a plant treated with a plantgrowth regulator. For example, one of ordinary skill in the art wouldunderstand a control plant to have one or more of the followingattributes: results from a seed derived from the same induction cross;has at least one parent in common with the treated plant; shares acommon ancestor with the treated plant within twelve generations; sharessufficient common genetic heritage with the treated plant that one ofordinary skill in the art of plant breeding would recognize the controlplant as a valid comparison for establishing a correlation between theapplication of a plant growth regulator and the resulting phenotype;and/or has one dominant ear and no co-dominant ears (maize). One ofordinary skill in the art will recognize that an untreated plant that bychance (e.g., a statistical outlier), by some other type ofmanipulation, or other reason comprises a phenotype that varies from arepresentative phenotype for the untreated plant would not be anappropriate control plant.

Doubling Efficiencies

Haploid plants subjected to a chromosome doubling treatment (or incertain embodiments haploid plants to be subjected to a chromosomedoubling treatment) termed DH₀ plants, by contact with the chromosomedoubling agent can produce haploid egg and/or sperm, and if the DH₀plants are successfully selfed, the zygotic chromosome number can berecovered in the offspring (termed DH₁ seeds, plants, etc.), thusrestoring the vigor and fertility expected of a 2n sporophyte. “DoublingEfficiency” (DE) is an overall gauge of doubling success calculated bydividing the number of DH₀ plants of a designation that produce DH₁ seedby the total number of DH₀ plants of that designation that weresubjected to a chromosome doubling treatment.

While recovery of a single DH₁ seed can technically be counted as asuccessful doubling event, plant breeders usually require a populationof at least several plants in order to generate the statistical powernecessary to draw confident conclusions from genetic and statisticaltests performed on the population. For example, a doubling treatmentthat produces only one or a few DH₁ seeds will be of limited use in acompetitive breeding program because at least one additional generationof planting, growing, pollinating, and harvesting will be required togenerate a sufficient population size for accurate statistical testing,especially if comparisons across multiple environments are planned. In arelatively large breeding program this seed “bulking” step can pushtesting of that population back an entire season, which typically delaysrelease of a commercial product, potentially resulting in loss ofvaluable market share. Since the methods described herein can increasethe number of DH₁ seeds produced by a DH₀ plant in a single generation,they can also reduce the likelihood that an additional generation willbe necessary order to bulk up (increase) the number of DH₁ seeds from agiven cross in order to advance that population onto subsequent steps(e.g. field testing) in a breeding pipeline. Thus, a user of methodsdescribed herein will be able to develop improved germplasm for marketfaster than those using current methods described elsewhere.

In order to better quantify doubling treatment efficacy, minimum yieldconstraints can be applied during the process of calculating DE suchthat a given DH₀ plant must produce at least a minimum number of DH₁seeds before it is counted in the proportion of successful doublingevents, i.e. used in the numerator. Subscripts can be used to signifythe minimum yield constraint such that DE₂₀ is the doubling efficiencycalculated when only DH₀ plants that produced at least 20 DH₁ seeds aredivided by the total number of DH₀ plants subjected to the doublingtreatment. DE₃₀ represents the DE when only the DH₀ plants that producedat least 30 DH₁ seeds are divided by the total number of DH₀ plantssubjected to the doubling treatment. Similarly, DE₅₀ represents the DEwhen only the DH₀ plants that produced at least 50 DH₁ seeds are dividedby the total number of DH₀ plants subjected to the doubling treatmentand so on.

Axillary Bud Induction and Promotion

Described herein is the discovery that it is now possible todramatically increase the likelihood of recovering a target number ofseeds in a single generation from a DH₀ monocot plant. Methods compriseinducing or promoting the monocot plant to develop at least one of avariety of different types of axillary buds that can give rise toadditional inflorescences. Different embodiments of axillary budinduction and/or treating plants at different growth stages to controlthe type of axillary bud(s) that develop are possible. Non-limitingexamples include multibuds, tillers, and co-dominant ears, which aredefined in detail herein.

Axillary bud induction in monocots relaxes the apical dominance thatnormally inhibits the development of side shoots and/or secondaryflowers or inflorescences. In certain embodiments a user causes a motherplant to produce a greater number of fertile female inflorescence andfertile female eggs than current methods of plant breeding and cropcultivation which focus on maximizing the development of a single femaleinflorescence.

Although known to sometimes arise and develop spontaneously, theformation or development of axillary buds in maize is presently anundesirable trait that is eliminated from breeding programs for a numberof reasons described herein. Among these is the idea that hormonesresponsible for maintaining apical dominance will suppress thedevelopment of axillary bud flowers, so it is more efficient if theplant does not waste resources developing them or the vegetativestructures that support them. This is especially apparent in modernmaize hybrids, where yields are typically maximized in good environmentsby growing hybrids selected to focus their resources on developing asingle, super-performing ear that nicks well and minimize thedevelopment of any axillary buds or secondary inflorescences.

It has been discovered, however, that by subjecting a monocot plant toat least one of several possible axillary bud induction treatments atone or more of many possible points in the plant's life cycle it ispossible to release the developmental programming for greater apicaldominance that plant breeders have selected for. In certain embodiments,a user subjects a monocot plant to a treatment that promotes thedevelopment of at least one pre-existing or primordial axillary bud suchthat it either forms a lateral side shoot (e.g. a tiller) or a secondary(or tertiary, or quaternary, etc.) inflorescence on the main stem of amaize plant. A user can sync the development of at least one axillarybud on a maize plant with the development of other buds on the maizeplant to effect a simultaneous and coordinated development of at leasttwo ears on the plant that exhibit the traits expected of a dominantear, including being receptive to pollination at about the same time(e.g. co-dominant ears). Descriptions and examples herein enable a userto chooses and/or develop an appropriate combination of inductiontreatment parameters from a wide range of options to suit specificneeds. Certain embodiments include subjecting a plant to a treatmentthat resets the developmental program of at least one cell in the nodalregion of the main stem such that it gives rise to at least one newlateral shoot meristem that develops into a new lateral branch capableof producing fertile inflorescences (e.g. multibuds).

Thus, in certain embodiments, a user can confidently recover a targetnumber of seed from a DH₀ monocot plant by inducing it to formadditional flowers from axillary buds, pollinating those flowers, andthen harvesting the seed that form from those additional flowers untilthe target number of seeds is obtained. By combining all the seedsproduced by a plant induced to form additional axillary buds one canincrease the chances of producing a desired number of seeds from asingle mother plant in a single generation.

Nick

In maize, successful kernel formation requires an overlap in timeframewhen the female structures necessary to support fertilization are fullyfunctional and the timeframe when pollen is viable and released from thetassel. Good nick describes circumstances when the overlap in thosetimeframes is sufficient to fertilize most, if not all, of the availableovaries on the ear. Because pollen can be sensitive to desiccation,heat, and other environmental factors, the timeframe for good nick isoften limited to several days or even a few hours. If pollen is releasedtoo soon such that most or all of it is non-viable by the time thefemale flowers are receptive to pollination, then nick will be poor,leading to many unfertilized eggs and poor seed set. Nick is alsoexpected to be poor when pollen is released so late that the silks aredead or the female flowers are otherwise no longer receptive and/orcapable of supporting fertilization. Under normal growth conditions thedevelopment of secondary ears is usually suppressed and delayed so thatthe primary ear is typically the only whose development is sufficientlyaligned with that of the tassel for good nick to occur.

Nick serves such a crucial connection in the maize life cycle thatcommercial producers and maize breeders alike spend considerableresources helping ensure it. It is not uncommon for a competitive orindustrial breeding program to cull lines otherwise exhibiting excellentperformance but do not nick well and thus their maintenance becomesuneconomical. For example, a population of DH₀ plants may exhibit a veryhigh rate of doubling and contain excellent genetics, but may still beeliminated from further development if it nicks so poorly that it is astruggle to produce sufficient seed to self and/or maintain or if morethan one generation is required to produce sufficient seed forperformance testing.

Plant Treatment Agents

In certain embodiments provided herein, a plant can be contacted with awide variety of “plant treatment agents.” Thus, as used herein, a “planttreatment agent”, or “treatment agent”, or “agent” can refer to anyexogenously-provided compound that can be introduced to the surface of aplant and migrate into a plant tissue. In some embodiments, the planttreatment agent acts extracellularly within the plant tissue, such asinteracting with receptors on the outer cell surface. In someembodiments, the plant treatment agent enters into cells within thetissue. In some embodiments, the plant treatment agent is containedwithin a liquid. Such liquids include, but are not limited to,solutions, suspensions, emulsions, and colloidal dispersions.

Contacting a plant with a treatment agent can occur before, during, orafter the application of other substances. In certain embodiments,contact between the plant and the treatment agent is achieved bydipping, submerging, or otherwise inserting the plant into a reservoirof liquid comprising the plant treatment agent. Other methods ofcontacting a plant with a treatment agent include spraying or mistingthe plant with a solution comprising a plant treatment agent oragitating or tumbling a plant in a solution comprising a plant treatmentagent. In certain embodiments, contact between the plant and thetreatment agent is achieved by a soil drench, which comprises adding aliquid treatment agent to the soil or growth medium near the roots wherethe plant will grow.

In certain embodiments, liquids are of an aqueous nature. In certainembodiments, aqueous liquids can comprise water soluble components. Incertain embodiments, aqueous liquids can comprise water insolublecomponents, can comprise an insoluble component that is made soluble inwater by addition of a surfactant, or can comprise any combination ofsoluble components, insoluble components, and surfactants.

A “plant treatment solution” or “treatment solution” can refer to anysolution of liquid that comprises a plant treatment agent. In certainembodiments, a plant treatment solution comprises a plant treatmentagent and the two terms can often be used synonymously. For example,delivering a plant treatment solution comprising the plant treatmentagent colchicine to a plant meristem is essentially synonymous withdelivering a plant treatment agent comprising colchicine to a plantmeristem.

Plant treatment agents include, but are not limited to, macromoleculesincluding polynucleotides including nucleic acids (e.g. DNA and/or RNA),polypeptides, polysaccharides, polyketides, and the like.Polynucleotides can be single-stranded or double-stranded and caninclude anti-sense molecules and interfering RNAs.

Polynucleotides can include mutations and/or various othermodifications, such as to their backbones, that are well known in theart. Polynucleotides include “genetic elements”, which compriserecombinant DNA constructs (commonly referred to as “transgenes”) thathave been inserted into a plant genome, or a nucleotide sequence, or agenetic locus of a plant genome. Thus, in certain embodiments, a user ofthis invention can deliver a sequence of DNA or RNA to a targeted tissueto alter the expression or inheritance of a plant trait, for example, toeffectively “transform” a plant by inserting a genetic element into itsgenome.

Plant treatment agents can also comprise various phytohormones,phytohormone agonists, phytohormone antagonists, or agents thatstimulate or inhibit phytohormone perception, signaling or synthesis. Incertain embodiments, a plant treatment agent comprises a plant growthregulator (PGR). PGRs are a class of compounds that affect the cellularprocesses, growth, development or behavior of a plant or plant part. Insome embodiments a PGR is responsible for accelerating or retarding therate of growth or maturation or otherwise altering the behavior of aplant or plant part. In some embodiments, a PGR is a naturally-occurringplant hormone. In some embodiments, a PGR is an chemical altersflowering, internode length, apical dominance, ripening, rootarchitecture, or fruiting, including any substance that affects growth,development, behavior, or reproduction in a monocot plant. Plant growthregulators include auxins (e.g. IAA) and auxin inhibitors, cytokinins(e.g. BAP) and cytokinin inhibitors, compounds that can stimulateethylene production (i.e. ACC and the like) and compounds that caninhibit ethylene production (AVG and the like), and compounds thatinhibit ethylene perception (silver and the like). Plant growthregulators also comprise compounds that modulate plant perception,signaling, and/or behavior, such as giberrellins and their inhibitors(e.g. Paclobutrazol (PBZ) or uniconazole), abscisic acid and itsinhibitors, and jasmonic acid and its inhibitors. Other examples includepeptide hormones, for example, systemin, phytosulfokine, rapidalkalinization factor and the like.

IAA is indole-3-acetic acid, and IBA is inodole-3-butyric acid. Both arenaturally-occurring forms of a class of plant hormones called auxins.Other variations of auxin can be used, including synthetic auxins, suchas 2,4-D (2,4-Dichlorophenoxyactic acid and α-NAA (α-Naphthalene aceticacid).

As used herein, PBZ is paclobutrazol,(2S,3S)-1-(4-chlorophenyl)-4,4-dimethyl-2-(1,2,4-triazol-1-yl)pentan-3-ol, also written as C15H10CIN30, a plant growth regulator andtriazole fungicide. It is a known antagonist of the plant hormonegibberellins that inhibits giberellin biosynthesis, reducing internodalgrowth and increasing stem girth. BAP is 6-Benzylaminopurine,N-(Phenylmethyl)-7H-pruin-6-amine, also written as C12H11N5. IAA isindole-3-acetic acid, and IBA is inodole-3-butyric acid. Both arenaturally-occurring forms of a class of plant hormones called auxins.Other variations of auxin can be used with this invention, includingsynthetic auxins, such as 2,4-D (2,4-Dichlorophenoxyactic acid) and1-NAA (1-Naphthalene acetic acid).

As used herein, uniconazole is(e)-(+/−)-beta-((4-chlorophenyl)methylene)-alpha-(1,1-dimethylethyl)-1h-1,2,4-triazole-1-ethanol,also written as C15H18CIN3O, also known as uniconazole-P. It is atriazole-type plant growth retardant and known antagonist of the planthormone giberellin that reduces internodal growth and increases stemgirth.

In general, plant treatment agents used herein will be water solubleagents. However, the use of plant treatment agents with high,intermediate, low or negligible water solubility can, in certainembodiments, be facilitated by the use of liquid compositions that alsocomprise various transfer or conditioning agents. Transfer orconditioning agents can comprise any agent that facilitates migration ofplant treatment agents to the plant (e.g., plant cells) and/or thatfacilitate uptake of plant treatment agents by the plant. Transfer orconditioning agents include, but are not limited to, (a) surfactants,(b) an organic solvents or an aqueous solutions or aqueous mixtures oforganic solvents, (c) oxidizing agents, (d) acids, (e) bases, (f) oils,(g) enzymes, or combinations thereof. In certain embodiments, methodscan optionally include an incubation step, a neutralization step (e. g.,to neutralize an acid, base, or oxidizing agent, or to inactivate anenzyme), a rinsing step, or combinations thereof whereby the liquid andplant treatment agent contained therein is treated either before orafter delivery to the plant. Transfer or conditioning agents thusinclude, but are not limited to, emulsions, reverse emulsions,liposomes, and other micellar-like compositions. Examples of usefuladjuvants include surfactants and effective molecules contained therein,which include sodium or lithium salts of fatty acids (such as tallow ortallowamines or phospholipids). Transfer or conditioning agents cancomprise salts including, but not limited to, sodium, ammonium, calcium,lithium, magnesium, chloride, sulfide, and sulfate salts. Certainembodiments of the methods provided herein use counter-ions or othermolecules that are known to associate with plant treatment agents. Forcertain negatively charged plant treatment agents such aspolynucleotides, cations such as inorganic ammonium ions, alkyl ammoniumions, lithium ions, polyamines such as spermine, spermidine, orputrescine, and the like can be used. Organic solvents useful inconditioning a plant cell to permeation with certain plant treatmentagents including, but not limited to polynucleotides, are solvents suchas DMSO, DMF, pyridine, N-pyrrolidine, hexamethyiphosphoramide,acetonitrile, dioxane, polypropylene glycol, or other solvents that aremiscible with water. Naturally derived or synthetic oils with or withoutsurfactants or emulsifiers can be used, e. g., plant-sourced oils, cropoils (such as those listed in the 9th Compendium of Herbicide Adjuvants,publicly available on the world wide web (internet) at“herbicide.adjuvants.com”) can be used. Oils useful in certain liquidcompositions used in the methods provided herein include, but are notlimited to, paraffinic oils, polyol fatty acid esters, or oils withshort-chain molecules modified with amides or polyamines such aspolyethyleneimine or N-pyrrolidine.

In certain embodiments, a plant treatment agent can be a chromosomaldoubling agent. Chromosome doubling agents are used to generate doubledhaploid plant cells and doubled haploid plants. Chromosomal doublingagents can comprise various mitotic inhibitors that cause chromosomedoubling. In certain embodiments, the chromosome doubling agent can be acompound such as colchicine, amiprophos methyl, trifluralin, oryzalin,pronamide, or chloropropham. In still other embodiments, the chromosomedoubling agent can be a low mammalian toxicity chromosomal doublingagent. Various low mammalian toxicity chromosome doubling agents thatcan be used include, but are not limited to, compounds such as: i)1,2,3-trimethoxy-4-((1S,6R)-6-nitro-cyclohex-3-enyl)-benzene and otherrelated compounds disclosed in US Patent Application Publication2010/0169999; and ii) compounds disclosed in U.S. Pat. No. 5,866,513 toMichelotti et al. U.S. Patent Application Publication 2010/0169999 andU.S. Pat. No. 5,866,513 are incorporated herein by reference in theirentireties. In particular, the 76 compounds disclosed in Table I and 1aon Cols. 3-4, 5-6, and 7-8 of U.S. Pat. No. 5,866,513 are eachincorporated herein by reference. In certain embodiments, the chromosomedoubling agent is a polynucleotide.

In certain embodiments, a broad range of chemical concentrations anddosing schedules can be used in conjunction with these methods and oneof ordinary skill in the art can optimize the dose administered to agiven genotype in order to maximize co-dominant ear formation and/ormaximize nicking and/or fertilization among co-dominant ears.

Types of Plants

Unless otherwise specified, this disclosure is not limited to anyparticular type of monocot plant. For example, in certain embodiments,the monocot plant is a member of the family Poaceae, wheat plant, maizeplant, sweet corn plant, rice plant, wild rice plant, barley plant, rye,millet plant, sorghum plant, sugar cane plant, turfgrass plant, bambooplant, oat plant, brome-grass plant, Miscanthus plant, pampas grassplant, switchgrass (Panicum) plant, and/or teosinte plant, or is amember of the family Alliaceae, onion plant, leek plant, garlic plant.

Unless otherwise specified, as used herein, a plant may be any wholemonocot plant, or part of a monocot plant, or tissue culture derivedfrom a monocot plant, or monocot plant seed; having a tissue to which aplant treatment agent can be delivered. A plant may be of variouschromosomal content, such as haploid, diploid, triploid, tetraploid,etc. Polyploidy refers generally to a condition of having a ploidy levelgreater than triploid. In certain embodiments, a distinction is madebetween plant tissues grown in tissue culture and non-tissue cultureplants.

Unless otherwise specified, as used herein, the surface of a plantrefers to the surface that is generally exposed to the externalenvironment surrounding the plant without pulling, cutting, etc. theplant to expose additional areas. For example, if a plant is submergedcompletely in a solution, the surface of the plant is generally theportion of the plant that would come in contact with the solution.

A plant tissue can be any plant tissue. In certain embodiments, a planttissue can include a functional meristem or grouping of cells capable offorming a functional meristem. A functional meristem is defined as acenter of pluripotent cells that has the ability to give rise to newplant tissues or organs. In certain embodiments, the plant tissuecomprises a meristem tissue such as a root apical meristem or a shootapical meristem.

In certain embodiments, a plant treatment agent is delivered to atargeted or selected plant tissue. A plant tissue can be targeted orselected based on the tissue's response to the plant treatment agentand/or the influence over the plants growth, characteristics, genetics,yield, etc., that is sought to be achieved. For example, the shootapical meristem, particularly of a DH₀ plant, can be selected for thedelivery of a chromosome doubling agent. The selected tissue can belocated at the surface of the plant and/or it can be located beneath theplant surface or beneath a portion of the plant surface. Thus, incertain embodiments, wherein even the entire surface of a plant iscontacted by a solution comprising a plant treatment agent such as bycompletely submerging the plant, at least a portion of the selectedtissue may not be contacted by the solution.

In certain embodiments, prior to germination, the plant or a propaguleof the plant is contacted with a plant treatment agent in order todeliver the treatment agent to at least one selected tissue of theplant. In certain embodiments, embryo rescue techniques known in the artare used to excise an embryo from the seed prior to germination of theseed in order to better contact the embryo to the treatment agent. Afterexcision, the embryo can be cultured in vitro or otherwise grown inconditions that promote its survival and development into a seedling.Thus, delivery of a plant treatment agent to selected tissues of a plantprior to germination can be improved using a variety of techniquescurrently known in the art, including embryo rescue techniques, therebyallowing the embryo to be contacted by the plant treatment agent. Incertain embodiments, these methods are used to deliver a doubling agentto a meristem of a haploid embryo in order to create at least onedoubled haploid reproductive tissue capable of producing functional,haploid gametes.

A monocot plant for use in methods described herein can be at any ofvarious developmental stages. For example, maize plants can be describedby their vegetative growth and reproductive stages, and as used herein,the stages of maize kernel development (Leaf Collar method: V1-Vn, Vt,R1-R6, etc.) are as described in Abendroth, L. J., R. W. Elmore, M. J.Boyer, and S. K. Marlay, 2011, Corn Growth and Development, PMR 1009,Iowa State University Extension, Ames, Iowa.

In certain embodiments, the monocot plant is a maize plant. In certainembodiments, the monocot plant is a maize plant and the plant tissue isa meristem. In certain embodiments, the monocot plant is a maize plantand the plant tissue comprises a shoot apical meristem (SAM). In certainembodiments, the monocot plant is a maize plant, the plant tissuecomprises a shoot apical meristem, and the maize plant is within theseed or germinating or at or between the VE, V1, V2, V3, V4, V5, V6, V7,V8, V9, V10, V11, or V12 vegetative growth stage. In certainembodiments, the monocot plant is a haploid maize plant, the planttissue comprises a shoot apical meristem, the maize plant is within theseed or germinating or at or between the E, V1, V2, V3, V4, V5, V6, V7,V8, V9, V10, V11, or V12 vegetative growth stage.

Methods described herein are not restricted by certain stages of aplant's development. It is anticipated that techniques of prolonging orotherwise modifying the duration of growth stages could be used inconjunction with this invention to expand a user's options of when toapply a PGR in order to induce development of additional shoot apicalmeristems and/or axillary buds and/or codominant ears.

Methods for Producing Doubled Haploid Plants

Certain embodiments described herein provide solutions to a problem thatthose of ordinary skill in the art have been struggling to solve fordecades. This problem is how to ensure that substantially any doubledDH₀ plant will produce a desired number of DH₁ seeds in a singlegeneration. In certain embodiments, the likelihood of recovering atleast a minimum number of DH₁ seeds from a DH₀ plant (for example, atleast one DH₁ seed, at least four DH₁ seeds, at least twenty DH₁ seeds,etc.) can be improved by inducing or promoting a DH₀ plant to develop atleast one additional axillary bud. This process can be repeated withother axial buds, simultaneously and/or sequentially, until a targetnumber of seeds is generated. By combining the seeds produced by atleast one axillary bud with the seeds produced by at least one otheraxillary bud, and/or the seed produced by the primary bud of a DH₀mother plant, these methods can improve the likelihood of recoveringdozens, hundreds, or even thousands of DH₁ seeds from a single DH₀plant.

Colchicine-based chromosome doubling protocols generally suggestexposures of several minutes to several hours and rely on the hope thatduring that time not only does the colchicine specifically contact cellsof the shoot apical meristem that will give rise to reproductive organs,but also that the contact occurs during the specific periods of the cellcycle necessary for chromosome doubling to occur. The uncertainties ofthis translate into the problems of low maize doubling predictabilityand efficiency problems that plant breeders have been struggling tosolve for many years.

In certain embodiments, the unpredictability of current DH methods canbe decreased by increasing the number of chances each single mother DH₁maize plant has of meeting the conditions necessary to produce adoubled-haploid inflorescence. It has been discovered that a singlehaploid maize plant can now be induced to produce a target number of DH₁offspring with much greater frequency and reliability. Haploid plantscan be induced to form multiple axillary meristems into fertilefruit-bearing structures to produce greater numbers of DH₁ seed ascompared to control plants that have not been induced in such a manner.

Haploid monocot plants that are used for obtaining doubled haploidplants, seeds, and/or cells can be acquired by any method. In certainembodiments, haploid maize plants, or the haploid ears derived fromthem, can be obtained by crossing an inducer line (male) with a desiredline (as female) to induce haploid plant cell formation in the femaleline. Exemplary inducer lines for maize include, but are not limited to,Stock 6, RWS, KEMS, Krasnodar Haploid Inducer (KHI), KMS or ZMS, linescomprising an indeterminate gametophyte (ig) mutation, and derivativesthereof. In other embodiments, wide hybridization crosses can be used toproduce haploids. Exemplary descriptions of wide hybridization crossescan be found in Kasha and Kao, 1970, Nature 225:874-876. Any othermethod of haploid induction could also be used with these methods,including molecular or transgenic-based approaches, for example, thoseinvolving CENH3 alterations or other genome degradation-based methods.

Certain embodiments provide for methods of obtaining a doubled haploidmaize plant cell, the method comprising contacting a maize plant with asolution that comprises a plant treatment agent, wherein the planttreatment agent is a chromosome doubling agent, and allowing thedoubling agent to cause formation of at least one doubled-haploid plantcell. Also provided herein are methods of obtaining a doubled haploidmaize plant cell, the method comprising harvesting a doubled haploidplant cell from a seed comprising a doubled-haploid plant cell. Incertain embodiments, the seed is on the ear of maize as the plant cellis harvested from the seed.

Certain embodiments provide methods of obtaining a doubled-haploid maizeplant, the method comprising obtaining a doubled-haploid maize embryoderived by any of the methods provided herein and supplying sufficientnutrients to the embryo to permit development of the embryo into thedoubled-haploid maize plant seed. A doubled-haploid maize embryo can beformed by methods comprising performing any of the aforementionedmethods of delivering a solution comprising a plant treatment agent intothe shoot apical meristem, wherein the plant treatment agent is achromosome doubling agent, and allowing the doubling agent to inducechromosome doubling.

In certain embodiments of these methods, the doubled-haploid maize plantcell is obtained from a third party. In other words, the party whocaused the formation of the doubled-haploid maize plant cell is notnecessarily the party who supplies the nutrients to permit developmentof the plant cell into the doubled-haploid maize plant.

Also provided herein are methods of obtaining a seed comprising adoubled-haploid maize plant cell, the method comprising harvesting aseed comprising a doubled-haploid plant cell obtained by the methods ofobtaining a doubled-haploid maize plant cell. A doubled-haploid maizeplant cell can be obtained by methods comprising performing any of theaforementioned methods of delivering a solution comprising an planttreatment agent into the plant wherein the plant treatment agent is achromosome doubling agent, and allowing the doubling agent to induceformation of at least one doubled-haploid plant cell in at least one ofthe seeds. In certain embodiments, the harvested seed is aphysiologically mature seed.

Also provided herein are methods of obtaining a doubled-haploid maizeplant, the method comprising sowing a seed comprising a doubled-haploidmaize plant cell obtained by the methods of obtaining a seed comprisinga doubled-haploid maize plant cell, and permitting the sown seed todevelop into the doubled-haploid maize plant. In certain embodiments,the seed comprising the doubled-haploid maize plant cell is obtainedfrom a third party. In other words, the party who harvested the seed isnot necessarily the party who sowed the seed comprising thedoubled-haploid plant cell and permitted the sown seed to develop intothe doubled-haploid maize plant.

In certain embodiments, doubled haploid plant cells can be obtained byharvesting DH₁ seed from a DH maize ear that forms on a DH₀ planttreated with a chromosome doubling agent by the methods provided herein.Physiologically mature DH₁ seed derived from the DH ear on the DH₀mother plant can be harvested to obtain a doubled haploid plant cellthat is contained in the seed. Physiologically mature DH₁ seed from thetreated DH ear the DH₀ plant can also be sown and permitted to germinateto obtain a doubled haploid maize plant.

In certain embodiments, a haploid plant cell can be recovered from amaize ear treated with a chromosome doubling agent by rescuing a plantcell from a kernel on the ear. Plant cell rescue can be performed byremoving a treated plant cell from an ear, placing the plant cell inmedia that provides for plant cell and/or plant development, andallowing plant cell and/or plant development to occur. In certainembodiments, media that provides for plant cell and/or plant developmentcan include one or more phytohormones, salts, and/or sugars. Variousmedia and techniques for plant cell rescue are described inMatthys-Rochon, et al., Journal of Experimental Botany, Vol. 49, No.322, pp. 839-845, 1998.

These methods can be adjusted for a wide range of parameters in order tomaximize nicking among the co-dominant ears of substantially anygenotype of plants. One of ordinary skill in the art can adjust thesemethods for any number of variables known to affect plant development inconjunction with these methods, including altering planting density,dosage, chemical treatment methods or timing to improve nick and/orfertilization and/or seed production in a diverse range of plantgenotypes or germplasms. In certain embodiments, plants can be plantedat different densities to affect co-dominant ear formation. In certainembodiments, plants can be treated with at least one of many possiblechemical agents (e.g. agents that affect ear formation likeGA-inhibitors), using at least one of many possible dosage levels tooptimize formation and nicking among at least two co-dominant ears insubstantially any genotype or set of genotypes. In some embodiments,some other treatment known in the art to affect plant development can beprovided in order to optimize co-dominant ear formation. In someembodiments, a combination of the above can be used to optimizeco-dominant ear formation. In some embodiments, different treatments canbe used on different genotypes in order to optimize overall co-dominantear formation.

Plant Breeding

Methods provided herein can be used to increase the efficiency of plantbreeding in monocots by increasing the number of recombinant offspringthat a given mother plant produces in a single generation. Thisrealization has dramatic and broad applications to plant breeding as itincreases the likelihood that a single monocot plant will produceoffspring containing a statistically unlikely yet superior combinationof genetic elements. A plant breeder employing these methods tointegrate certain DNA sequences, genotypes, and/or phenotypic traitsinto a target germplasm and/or genome will be able to create a gametecontaining a sequence of DNA comprising a specific set of geneticelements using fewer mother plants and using fewer resources than abreeder using current methods known in the art. This is due, in part, tothe fact that the methods described herein effectively enable a user toinduce mother plants to produce more seeds per plant, which equates tomore meioses per plant, which equates to more opportunities per plantfor a desired genetic recombination to occur. More recombinationopportunities per plant therefore translates to fewer plants (and fewerresources) needed to reach an effective population size necessary toachieve a high likelihood of recovering at least one plant with adesired combination of genetic elements.

For example, when plant breeders use recurrent selection to introgress adesired genetic element into a target germplasm, they rely on geneticrecombination to occur between the homologous chromosomes of the targetgermplasm and the donor germplasm in loci the genomes flanking thedesired genetic locus. A user of these methods will have a greaterlikelihood of generating a mother plant with a genome comprising thetarget germplasm modified only by the sequence(s) of the donor genomenecessary to confer the desired genetic element because these methodsgenerate more recombination events per mother plant, and thus a userwill have a greater likelihood of creating a plant containing thedesired arrangement of genetic elements incorporated into its genomethan a user of other trait integration methods.

The benefits of this become even more apparent when trying to introgressmultiple genetic elements into a target germplasm because the number ofgenetic recombination events required to introgress additional geneticelements into a target germplasm rapidly increases with the number ofadditional genetic elements desired to be introgressed. A user of thesemethods will find they need far fewer mother plants to achieve a highlikelihood of recovering the desired introgression event(s), and thus,can dramatically increase the efficiency of creating a desiredarrangement of genetic elements in a gamete as compared to one usingcurrent methods in the art that ignore axillary buds and/or do notdeliberately induce axillary buds to produce fruit.

This realization is especially useful in inflorescent monocot species,for example maize, because each time an additional inflorescence isinduced to form, an entire ear worth of potential ovules (on average 500kernels or more for most high-yielding hybrids), each representing anopportunity for the required genetic recombinations to occur duringmeiosis. Thus, a breeder of ordinary skill in the art can use thesemethods to dramatically increase the efficiency of creating a desiredarrangement of genetic elements in a gamete as compared to one usingcurrent methods in the art that ignore axillary buds or do notdeliberately induce them to form and produce fruit.

These methods can be combined with any method of prolonging nick,prolonging pollen shed, or prolonging the period during which ears arereceptive to pollination and fertilization that are known in the art.For example, a tassel can be subjected to a treatment that prolongs theperiod during which the tassel sheds pollen. T pollen that is shed canbe preserved in order to extend the period of time that it is capable ofsuccessful pollination and subsequent fertilization. Other methods knownto improve or extend nick can also be employed.

In certain embodiments, axillary bud induction treatments can be appliedat the VE, V1, V2, V3, V4, V5, V6, V7, V8, V9, V10, V11, or V12 growthstages, or any combination thereof.

Multibuds

One type of induced axillary bud is a “multibud”, which is derived byinducing a plant to form a de novo axillary bud from differentiatedcells. This method effectively reprograms one or more cells of a plantto produce a de novo meristem, shoot or axillary bud.

In certain embodiments, a monocot seedling or a monocot plant embryo canbe subjected to axillary bud induction while still attached to the seed(direct seed approach) or the seedling/embryo can be dissected from theseed before germination (dissected embryo method), or theseedling/embryo can be separated from the seed after germination (embryoaxis method).

Disclosed herein is the discovery of several novel uses for multibuds inmonocots, including the improvement of doubling efficiency (“DH”), byensuring that a target number of seeds is generated from a cross orself. In certain embodiments, a user desiring to ensure that at least aminimum number of seeds is generated in a single generation by a DH₀plant induces the DH₀ plant to form at least one doubled-haploidmultibud. In certain embodiments, at least one of these multibuds isgrown into a mature haploid plant that is selfed to produce DH₁ seed.This process can be repeated, simultaneously and/or sequentially, untilthe desired target number of seeds is generated.

In certain embodiments, these methods can first increase the number ofdoubled-haploid seed recovered by inducing a diploid parent plant toproduce at least two diploid multibuds which are then grown into maturediploid plants. These multibud-derived parent plants can then bepollinated with an inducer to form at least one haploid seed, which canbe subsequently grow into seedlings and subjected to chromosome doublingtechniques known in the art to convert the haploids into a population ofDH₀ plants. The DH₁ plants can then be grown until they produce flowers,and then pollinated to produce DH₁ seeds.

In certain embodiments, a single diploid plant can be subjected to amultibud induction treatment to generate several diploid multibuds.These multibuds can be separated from the mother plant and grown untilthey produce flowers, at which time they can be pollinated by aninducer. Even if some multibud-derived ears produce very few or noseeds, it is expected that this method can be repeated, eithersequentially or simultaneously, until a target number of seeds aregenerated when all seeds from multibud-derived ears are combined. Asmany of these haploid plants as are necessary can be subjected tochromosome doubling to produce a desired number of DH plants.

The haploid seeds recovered and pooled from at least onemultibud-induced ear can be subjected to any manner of analyses the userdeems appropriate in order to determine which seeds contain specifictraits. These analyses can include sorting the seeds (including theembryos and all other tissues of the seed) to identify and separate outdiploid seeds, including the haploid sorting methods described in U.S.patent application Ser. No. 14/206,238 which published asUS20140266196A1 and which is incorporated by reference herein in itsentirety. Analyses can also include genotyping tissues using methodsknown in the art. Regardless of how the haploid seeds are analyzed, asubset of the population can be selected based on any criterion in orderto limit the number of plants that are subjected to subsequent doublingsteps. Thus, these methods can reduce the amount of resources spentdoubling plants that do not meet a target selection threshold.

Unlike current methods of producing DH plants, a user of these methodsdoes not rely on only a single chance at doubling the cells necessary toproduce an ear containing at least the target number of haploid eggs.Rather, the user is able to produce multiple ears from a single DH₁plant, and thus combines multiple doubling opportunities to achieve atarget number of haploid eggs.

Tillers

Tillers are a type of axillary bud. The induction of tillers in monocotsrelaxes the suppression inhibiting the development of an axillary bud sothat the axillary bud is able to form an elongated side shoot thatultimately produces a tassel and at least one female flower known as anear. Although known to form spontaneously, the formation of tillers isan undesirable trait that is eliminated from maize breeding programs fora number of reasons, including the fact that they make preserving theidentity of neighboring plants more difficult and increase thelikelihood of cross-contaminating seeds of different experimentaltreatments. They also tend to overgrow the area normally allotted to anindividual plant, which upsets planting arrangements, makes human andmachine access more difficult, and disrupts efficient field maintenance,cultivation, and harvest. Furthermore, tillers compete with the motherplant (i.e. the main stem from which the tillers were derived) fornearby resources, reducing the accuracy of phenotype evaluations andoverall yield per unit acre. For these and other reasons, tillers aregenerally eliminated from research plots and commercial operationsalike.

It has been discovered, however, that by subjecting a maize plant to anaxillary bud induction treatment at specific times in the plant lifecycle it is possible to generate multiple tiller shoots from a singlemother plant that produce ears which nick well with the tassels of thesame shoot and produce excellent seed set when pollinated. Thus, thesemethods can increase the chance of recovering a target number of seedproduced by a single maize plant by inducing it to form tillers,allowing those tillers to produce their own ears, and then harvestingthe seeds from at least one of the ears produced by at least one of thetillers. By combining the seeds produced by at least one tiller with theseeds produced by at least one other tiller, and/or the seed produced bythe mother plant, these methods can increase the chance of recoveringdozens, hundreds, or even thousands of seeds from a single plant.

In certain embodiments, a method comprises inducing a DH₀ plant to format least one doubled haploid tiller. At least one of these tillers isgrown into a mature haploid plant that is selfed to produce DH₁ seed.The process can be repeated, simultaneously and/or sequentially, until atarget number of seeds is generated. By combining the seeds produced byat least one tiller with the seeds produced by at least one othertiller, and/or the seed produced by the DH₀ mother plant, these methodscan increase the chance of recovering of dozens, hundreds, or eventhousands of seeds from a single DH₀ plant.

Unlike current methods of producing DH plants, these methods are notlimited a single chance at doubling the cells necessary to produce anear or tassel containing at least the target number of haploid eggs orpollen. Rather, they produce multiple ears and tassels from a single DH₀plant, thus combining multiple doubling opportunities to produce an earcontaining at least the target number of haploid eggs and pollen, andsubsequent to pollination and fertilization, the target number of DH₁seed.

Co-Dominant Ears

Certain embodiments provide for the production of co-dominant ears. Incertain embodiments, the development of co-dominant ears is coordinatedsuch that at least two co-dominant ears are receptive to pollination ata time that overlaps with pollen shed from tassels of the same plant. Incertain embodiments, the development of co-dominant ears is coordinatedsuch that at least two co-dominant ears are receptive to pollination ata time that overlaps with pollen shed from tassels of another desiredgermplasm.

Certain embodiments comprise subjecting a plant to an axillary budinduction treatment at specific times in a plant's life cycle. It ispossible to generate at least two co-dominant ears on a single plantwhose development is coordinated such that the ears nick well andproduce excellent seed set when pollinated. These methods can increasethe recovery of a target number of offspring seed from a single parentplant by inducing the parent plant to form multiple co-dominant earsthat are all receptive to pollination in overlapping timeframes.

In certain embodiments, seeds are generated in a single generation by aDH₀ plant by inducing the DH₀ plant to form at least two co-dominantears after doubling treatment. Unlike conventional methods of producingDH plants, these methods do not rely on only a single chance at doublingthe cells necessary to produce an ear containing at least the targetnumber of haploid eggs. Rather, multiple ears are produced from a singleDH₀ plant, thus combining multiple doubling opportunities to produce theat least target number of haploid gametes, and subsequent to pollinationand fertilization, for example to produce the target number of DH₁ seed.

An unexpected observation has a considerable impact on DH production.Once a DH₀ plant is treated with induction agent, it is not entirelypredictable as to which ear on the DH₀ plant will produce the greatestnumber of DH₁ seed. In some cases, the second and/or third ear hadbetter seed set than the first ear. Surprisingly, in some cases thefirst ear yielded few seeds or no seeds whatsoever while the secondand/or third ears yielded abundant seeds.

Furthermore, representative results described herein reveal that it isstochastic as to which ear has the most doubling potential. It wasdemonstrated that it is not predictable which axillary meristems alongthe shoot are most likely to be doubled by a chromosome doublingtreatment even among the closely-related members of an inbred line.

In cases where so many co-dominant ears have formed on the mother plantthat there are insufficient resources to fully support theirdevelopment, the ears may be cultured separately, e.g. in vitro, inseparate pots, or in any other way known in the art.

In certain embodiments, the co-dominant ear induction treatmentcomprises applying a plant treatment agent to a plant. In certainembodiments, the plant treatment agent is a plant hormone or combinationof plant hormones. In certain embodiments, the co-dominant ear inductiontreatment comprises applying a gibberellic acid inhibitor, such as PBZ,uniconazole, chlormequat-CL, mepiquat-CL, AMO-1618, clorphonium-C1,tetcylacis, ancymidol, flurprimidol, paclobutrazol, uniconazole-P,inabenfide, prohexadione-CA, trinexapac-ethyl, daminozide, exo-16,17-,or dihydro-GA₅-13-acetate or a combination of any plant treatmentagents, for example, a GA inhibitor combination with cytokinin.

In certain embodiments, the co-dominant ears are formed on differentshoots. For example, a user can treat a main stem (i.e. the motherplant) with a plant treatment agent to cause the main stem to form atleast one tiller. The user times the treatment in order to coordinatethe development of an ear on the tiller (i.e. a tiller ear) and an earon the mother plant such that both ears produce silks and are receptiveto pollination in a substantially-overlapping timeframe. In certainembodiments, the user treats a mother plant to form at least two tillersand times the treatments in order to coordinate the development of atleast two tiller ears growing from different tillers so that the atleast two tiller ears produce silks receptive to pollination during asubstantially-overlapping timeframe. Thus, methods involving tillers andmethods involving co-dominant ears are not mutually exclusive; it ispossible to incorporate both types of axillary bud formation methods toachieve enhanced results in certain situations.

It is understood that for any of the methods disclosed herein, themethod can further include selecting plants, for examples based ondesired attributes such as number of tillers, number of co-dominantears, doubling efficiency, etc.

EXAMPLES

The following examples are included to demonstrate certain embodimentsof the invention. It should be appreciated by those of skill in the artthat the techniques disclosed in the examples which follow representtechniques discovered by the inventor to function well in the practiceof the invention. However, those of skill in the art should, in light ofthe present disclosure, appreciate that many changes can be made in thespecific embodiments which are disclosed and still obtain a like orsimilar result without departing from the spirit and scope of theinvention.

In the following examples, haploid maize seeds were obtained bypollinating F1 or F2 females containing desired genetics with pollenfrom a haploid inducer line. Ears were harvested when the seeds weremature, the ears were then shelled, and then the seeds sorted intohaploid vs. diploids. Haploid maize plants used herein were obtained bypollinating F1 or F2 maize plants with pollen from a haploid inducerline to form F1 hybrid-derived haploid induction populations. Ears wereharvested when the seeds were mature, shelled, and the haploid seedsrecovered by standard methods of the art.

Non-limiting examples of haploid inducer lines that can be used torepeat the experiments below include Stock 6 (Coe 1959), RWS (Rober etal. 1005), KEMS (Deimling et al. 1997), KMS or ZMS (Chalyk et al. 3994;Chalyk and Chebotar 1000), or other inducer lines derived from these.The inducer line may also carry at least one marker trait to facilitatethe identification of haploid offspring. The purity of the haploid poolcan be made to be 95% or greater and can be verified using a variety ofmethods known in the art.

Example 1. Maize Ear Prolificacy can be Manipulated to Produce MultipleEars Per Plant Across Diverse Germplasms

V1-V3 seedlings of two unique F1 hybrid-derived haploid maize lines,derived from: female heterotic group (Germplasm A) or male heteroticgroup (Germplasm B), were subjected to a bulk colchicine-basedchromosome doubling treatment by removing the seedlings from soil orgrowth media at the V1-V3 growth stage and aligning their stems andwrapping them together along with several wooden rods into bundle a heldtogether by a strip of aluminum foil (approximate foil strip dimensionswere 6 in×18 in). The bundled plants were submerged in plant treatmentsolution comprising 1250 ppm of colchicine in a centrifuge container andthen the entire sample was centrifuged at 50 g for 3 min while the shootapical meristems (SAMs) remained submerged in the plant treatment agentsolution.

Following the first centrifugation, the plant treatment solution wasdecanted and the seedlings subjected to an addition centrifugation at335 g for 3 min. During the second centrifugation, the rod-wrap bundlesupported the seedlings and prevented the SAMs from contacting thereserve treatment agent that was not absorbed by the plant duringapplication of the centrifugal force.

Following the second centrifugation, the plants were removed from thecentrifugation container and the rod-wrap bundle and rinsed with waterto remove any remaining colchicine solution, and then recovered andtended in a light, humidity, and temperature-controlled greenhouse forseveral days before being transplanted to a nursery greenhouse. Thesecentrifuge-based treatment methods are described in more detail inInternational application number PCT/US2015/028955, which isincorporated by reference herein in its entirety, however, standarddoubling treatments can also be applied to any of the haploid doublingsteps referred to herein.

Following colchicine doubling treatment, 15-20 plants from eachgermplasm were planted in pots at two different densities; either assingle plants per pot (singles), or as two plants per pot (pairs).

Next, each plant received one of two different doses of PBZ, either 50mL (low dose) or 60 mL (high dose) of a 2.5% PBZ solution (v/v; 0.4% ofactive ingredient) in water. These two different doses were applied bysoil drench at either the V7 or V8 growth stage, which occurred a totalof 23 or 26 days after the seedlings had been subjected to chromosomedoubling treatment, respectively. A control group of plants received notreatment solution but were otherwise treated exactly as theexperimental groups planted as singles. When pollen shed began at thetassels, the average number of silk-producing ears (i.e. co-dominantears) were counted for each dosage, germplasm, and treatment time andthe results summarized in Table. 1.

TABLE 1 The number of co-dominant ears formed per plant in two uniqueinduced haploid germplasms (A and B) following treatments at one of twodifferent doses of PBZ at one of two different developmental stagesfollowing chromosome doubling treatment. Planted Planted as Singles asPairs Growth Low High Low High Stage† Germplasm Dose Dose Dose Dose V7 B2.7 3.3 1.5 1.5 A 3.4 3.9 3 3.4 V8 B 2.3 2.2 1.5 1.5 A 2.3 3.5 2.3 2.2†V7 occurred 23 days after chromosome doubling treatment; V8 occurred 26days after chromosome doubling treatment.

The control plants for Germplasm A and Germplasm B produced 1.4 EP and1.1 EP, respectively.

These results reveal that these methods remain useful among differentplanting densities. Both germplasms formed more co-dominant ears whenindividuals were planted singly in pots, regardless of treatment timing.All paired Germplasm B plants produced fewer ears than any of thesingled Germplasm B plants, regardless of dosage or treatment timing,and the high-dose V8 Germplasm B population produced more than twicetheir doubled counterparts. This variance in the effect that plantingdensity has on different germplasms provides a user with theunderstanding that the optimum range of planting densities that one canemploy in conjunction with these methods can vary from germplasm togermplasm. It is expected that a user can adjust treatment timing andother growth or treatment conditions to optimize use of these methodswith different germplasms.

These results reveal that across the variables of dosage, density, andgermplasm, treatments applied at both V7 and V8 consistently producemore co-dominant ears for both germplasms than the controls. Thus, thesemethods are not limited to the application of co-dominant ear inductiontreatment during a particular point of plant development. In oneembodiment, co-dominant ear induction treatment occurs at a range oftimes selected by the user which improve the number of seeds produced bya haploid plant treated with a chromosome doubling agent.

The results reveal that these methods are not limited to use withspecific germplasms or plant genotypes. Furthermore, both germplasmsshowed varying improvements depending on other variables, such asplanting density, treatment schedules, dosages and other variables. Thenumber of co-dominant ears was improved for two drastically divergentgenotypes over a range of different treatment schedules. It isanticipated that users will use these methods with a wide range of othergermplasms and will be able to adjust parameters such as plantingdensity, the timing of ear induction treatment(s), the dosage ofchemicals used during ear induction treatment(s), and other variablesthat affect ear development to maximize nick among co-dominant ears andimprove the number of seed produced in a given generation.

These results reveal that the use of these methods is not limited tospecific dosages of chemicals that induce ear formation. A variety ofdifferent ear per plant (EP) improvements appear to correlate withdosage. For one, the average EP of all plants treated with the highdosage was 0.31 greater than the EP of all plants treated with the lowdosage. This relationship is even more pronounced when only the singleswere considered (the high-dose EP average was 0.55 higher than thelow-dose). Furthermore, singles subjected to the low dose still produceda minimum increase of 1.2 EP over control plants, suggesting there aredosage effects even outside of the range tested here that could be usedin conjunction with these methods.

Example 2. Harvesting and Pooling the Seeds of Co-Dominant Ears Improvesthe Recovery of DH₁ Seeds in a Single Generation

An F1 hybrid-derived haploid induction population derived from femaleinbred maize plant Germplasm A was germinated in soil and tended instandard greenhouse maize growing conditions for approximately sevendays. Seedlings were then subjected to a bulk colchicine-basedchromosome doubling treatment as described above. Following treatment,seedlings were transplanted into pots and tended in a greenhouse atstandard greenhouse maize growing conditions to recover.

Twenty-nine days after the colchicine doubling treatment, 77 of the DH₀seedlings were subjected to a co-dominant ear induction treatmentcomprising the addition of 60 mL of 2.5% PBZ (v/v) in water, which waspoured into the soil surrounding the roots of each plant. The seedlingswere then tended in standard greenhouse maize growing conditions untilthey flowered, at which time each plant that produced pollen wasself-pollinated. After approximately 3-4 weeks, ears were harvested andthe kernels (DH₁ seeds) that formed on the treated DH₀ plants werecounted to determine doubling efficiencies.

Doubling efficiencies (DE) were calculated under four differentconstraints, depending on the minimum number of kernels an ear had toproduce in order to even be included in the calculation. DE₀₄ representsthe portion of all the doubled DH₀ plants that produced a total of atleast four seeds when all ears were considered. DE₂₀ represents theportion of all the doubled DH₀ plants that produced a total of at least20 kernels when all ears were considered. Similarly, DE₃₀ represents theportion of doubled DH₀ plants that produced a total of at least 30kernels when all ears were considered, and DE₅₀ represents the portionof doubled DH₀ plants that produced a total of at least 50 kernels whenall ears were considered.

Furthermore, the above doubling efficiencies were calculated once byconsidering only the kernels that formed on the primary ear of eachplant (Ear₁), once by considering only the kernels that formed on theprimary and secondary ear of each plant (Ear₂), once by considering onlythe kernels that formed on the primary, secondary, and tertiary ear ofeach plant (Ear₃), and finally by considering all the kernels thatformed on all the ears of each plant (Ear_(all)).

TABLE 2 Comparison of doubling efficiencies produced by co-dominant earinduction at various minimum kernel/plant thresholds. Subscriptsrepresent the minimum number of kernels a plant had to produce in orderto be considered in the calculation of DE. DE₀₄ DE₂₀ DE₃₀ DE₅₀ Ear₁ 71%37% 26% 23% Ear₂ 76% 59% 47% 36% Ear₃ 76% 65% 58% 50% Ear_(All) 76% 68%58% 52%

These results reveal that greater doubling efficiencies were obtainedwhenever the kernels of co-dominant ears were included. Thisrelationship becomes even more apparent when minimum yield constraintsfor an ear to be included were applied. For DE₂₀, DE₃₀, and DE₅₀,including the kernels produced by all ears on each plant approximatelydoubled the DE over the EAR₁ DE in each case. This demonstrates theutility of these methods over wide range of minimum yield constraints.

These results reveal that a user of these methods should experience moreconsistent DE among a variety of different minimum yield constraints ascompared to methods currently known in the art. While the Ear₁ DEdropped by almost half between DE₀₄ and DE₂₀ (from 71% to 37%),including only one additional ear (Ear₁) resulted in only a 22%reduction in DE between DE₀₄ and DE₂₀ (from 76% to 59%). This reductionbetween DE₀₄ and DE₂₀ was even less for Ear₃ and Ear_(all).

Since DE is a factor of the number of ears bearing a certain number ofseeds recovered from an individual plant at a given generation, a userof these methods can expect to recover greater numbers of seed from agiven plant, and thus will be more likely to recover at least a minimumnumber of seeds from any particular cross than one using methods thatare presently known in the art. Thus, users of these methods will bemore successful at recovering the minimum number of seeds from a crossin a single generation that is necessary to efficiently test thatpopulation to make accurate advancement decisions in a breeding programand bring products to market faster. A user of these methods will alsobe better able to predict DE across different minimum yield thresholdsand thus be better able to anticipate recourse allocation among thepopulations derived from at least one induction cross.

Example 3. The Induction of Co-Dominant Ears Improves the DE of DiverseGermplasms

Two F1 hybrid-derived (one male and one female) haploid populations(referred to herein as H1 and H2) and two inbred-derived haploid lines(male Germplasm B and female Germplasm A) were tested in thisexperiment. Seven days after planting, several dozen seedlings from eachgroup were removed from the soil and subjected to a bulkcolchicine-based chromosome doubling treatment as described above. Afterthe chromosome doubling treatment, seedlings were transplanted to soiland tended in a greenhouse at standard maize growing conditions. Whenthe seedlings had reached approximately the V7 or V8 stage(approximately 29 days after doubling under the growing conditionsused), the seedlings were subjected to co-dominant ear inductiontreatment comprising 60 mL of 2.5% PBZ added to the soil surrounding thebase of each stem.

The seedlings were then tended in standard greenhouse maize growingconditions until they flowered, at which time each plant that producedpollen was self-pollinated and then left undisturbed to awaitfertilization and kernel production. After approximately 2-3 weeks, earswere harvested and the kernels that formed on them (MO were counted todetermine doubling efficiencies.

Doubling efficiencies (DE) were calculated under the differentconstraints described in the previous example to generate values forDE₀₄, DE₂₀, DE₃₀, and DE₅₀ for each of the four genotypes. Furthermore,the above doubling efficiencies were calculated once by considering onlythe kernels that formed on the primary ear of each plant (Ear₁), once byconsidering only the kernels that formed on the primary and secondaryear of each plant (Ear₁), once by considering only the kernels thatformed on the primary, secondary, and tertiary ear of each plant (Ear₃),and finally by considering all the kernels that formed on all the earsof each plant (Ear_(all)).

TABLE 3 Doubling efficiencies of four germplasms depending on whetheronly the primary ear was harvested (Ear₁) or all ears were harvested(Ear_(all)). Ear₁ Ear_(all) DE₀₄ DE₂₀ DE₃₀ DE₅₀ DE₀₄ DE₂₀ DE₃₀ DE₅₀Control A 72.9 60.7 48.6 48.6 81 76.9 76.9 64.8 A 64.6 37.4 30.6 23.881.6 71.4 71.4 64.6 Control B 64.8 44.5 40.5 32.4 68.8 56.7 56.7 44.5 B56.7 40.5 40.5 40.5 68.8 48.6 44.5 44.5

Table. 3 reveals that these methods can be used with a wide diversity ofgermplasms, including among inbred lines from different heterotic groupsand among hybrids derived from inbreds from different heterotic groups.It also reveals that across all germplasms and minimum yield thresholds,the Ear_(all) results always outperformed the Ear₁ results,demonstrating that a user of these methods can expect to improve DE byincluding the kernels produced by all additional co-dominant ears. Theseresults suggest that these methods could be adapted for use withsubstantially any genotype or germplasm of maize.

Example 4. Co-Dominant Ear Induction Combines the Doubling Odds ofMultiple Axillary Meristems to Improve DE and Seed Set

When the DH₁ ears were harvested in the experiment described in Example3, four DH₀ plants selected randomly from each germplasm were subjectedto further scrutiny comprising recording of the approximate number ofseeds produced from the first 3 co-dominant ears for each plant. FIG. 1shows the first three ears that were harvested from each of these fourplants and that figure is also represented in Table 4, below. In Table4, ears are assigned to one of 4 categories, depending on theapproximate number of seeds they produced: Class A ears producedapproximately 50 seeds, Class B ears produced approximately 20-49 seeds,Class C ears produced approximately 1-20 seeds, and Class 0 earsproduced zero seeds. Two plants failed to produce a third ear.

TABLE 4 Ears classified by the number of DH₁ seed they produced. “—”represents a situation where a third ear was not formed by the plant.The highest-yielding ear for each plant- germplasm combination is boldedin order to facilitate comparisons. Plant # 1 2 3 4 Ear # 1^(st) 2^(nd)3^(rd) 1^(st) 2^(nd) 3^(rd) 1^(st) 2^(nd) 3 1^(st) 2^(nd) 3^(rd) ControlA B A — C B C A C 0 B B 0 A C B C C A C C C B A C 0 Control B C C B A A0 A 0 C B B C B C A — B C C C A C C A C

These results reveal the discovery that different co-dominant ears havedifferent doubling potentials. It also reveals the surprising resultthat the highest-yielding ears may not be the first ear, or even thefirst or second ear. For example, the second ear yielded the most seedson Plant 1 from the Control A, Germplasm A and Germplasm B germplasms.For Plant 1 of Control B and Plant 3 of Germplasm A, the third earexhibited the greatest doubling potential.

This experiment also reveals the surprising result that haploid plantssubjected to a co-dominant ear induction treatment will invest moreresources developing ears that have been successfully doubled and thatare capable of producing viable diploid offspring, independent of therelative position of the ear on the stem. Development of haploid earsthat are not doubled, and thus are unlikely to produce seed, appears tobe arrested. For example, the ears producing no seed, or very few (1-4)seeds, on plant #2 and plant #3 of the H2 germplasm appear to have beenarrested while the plant clearly continued to invest resources intodeveloping the ears that did produce seed. This suggests that whendevelopment of an induced co-dominant ear growing on DH₀ plant isarrested it is because the ear was not doubled and not because of theear's position on the stem. Thus, an induced co-dominant andsuccessfully-doubled ear growing from a lower node is more likely tofollow the development schedule expected of a codominant ear than an eargrowing higher up the stem that is not successfully doubled.

Example 5. Co-Dominant Ear Induction Dramatically Increases SeedProduction in Diploids

Seeds of maize inbred lines Germplasm A and LH244 were planted in soil,germinated, and then transplanted to 10-inch pots after approximatelyone week, one seedling per pot. The plants were subjected to aco-dominant ear induction treatment at the V8 stage comprising drenchingthe soil surrounding the roots of each plant with 50 mL of a 2.5% PBZsolution (v/v; 0.4% of active ingredient). The plants were tended in agreenhouse until sexual maturity, then they were self-pollinated. Whenseed set had completed, the number of co-dominant ears, and the totalnumber of kernels, produced by each plant were counted. Control plantsfor each germplasm were processed in the same way as the treated groups,except that the control plants were not subjected to the co-dominant earinduction treatment.

TABLE 5 Average number of ears per plant and average total kernels perplant recovered from two genotypes subjected to a co-dominant earinduction treatment vs. a control treatment. Ave. Ears Ave. Total PerPlant Kernels Per Plant Treated Control Treated Control Germplasm A 83.5 1677 746 LH244 5.1 2.5 1126 557

Table 5 reveals the surprising result that it is possible todramatically increase the average total kernels per plant produced fromtwo different inbred lines by subjecting the plants to a co-dominant earinduction treatment. Both germplasms, very diverse from one another,responded to the co-dominant ear induction treatment by more thandoubling the average total kernels per plant and the average ears perplant. Furthermore, all ears recorded from the treated groups in Table 5were co-dominant.

A representative example of a Germplasm A plant that produced 8 earsfollowing treatment with these methods is shown in FIG. 2.

Although the control plants produced multiple ears, they produced noco-dominant ears; only the primary ears on the control plants nickedwell enough to produce any seed.

Example 6. Tiller Induction Dramatically Increases Seed Production inDiploids

Diploid maize plants of a common inbred line were subjected to a tillerinduction treatment comprising drenching the soil surrounding the rootswith 100 mL of a 2.5% PBZ solution (v/v; 0.4% of active ingredient)approximately one week after germination and then allowed to grow tosexual maturity in 10-inch pots a greenhouse. A control group of plantswere grown under identical circumstances except that they were notsubjected to the tiller induction treatment.

The GA inhibitor resulted in the mother plants expressing shortenedinternodes, and induced the mother plants to produce tillers. Threetreatment groups were then formed from the tillers: tillers of the“Co-hab” treatment were allowed to continue growing in the same pot withthe mother plant; those of the “-Mother” treatment also remained in thesame pot, but the mother plant was removed from the pot; and those ofthe “Transplanted” treatment group were transplanted from the potcontaining the mother plant into separate 10-inch pots, one plant perpot. Any naturally-occurring tillers produced by the control group wereallowed to grow in the same pot as the mother plant, similar to theco-hab treatment. All plants were allowed to grow to sexual maturity andself-pollinated when silks and tassels formed. When seed set wascomplete, the average total number of seeds produced by all plantsderiving from the same mother plant seed were counted and plotted inFIG. 3.

These results reveal that it is possible to dramatically increase theaverage total seeds per plant by subjecting plants to a tiller-inductiontreatment, evidenced by the transplanted treatment group producing morethan twice the number of seeds as the control group. It also revealsthat the best recovery of seeds occurred when tillers were transplantedaway from the mother plant.

Example 7. The Tiller-Induction Method and Doubling Haploid Plants

A haploid mother plant will be subjected to doubling treatment andthereafter planted in a pot, the soil surrounding the roots drenchedwith 100 mL of 2.5% of paclobutrazol, and then tended standard maizegreen house growing conditions for several days. The GA inhibitor willresult in the mother plant expressing shortened internodes and increasedtiller production. One of the resulting daughter tiller plants can beseparated from the mother plant, transplanted into a separate pot, andgrown via standard green house management procedures to eventuallyrecover a daughter plant with normal haploid morphology. This daughterplant will produce abundant pollen and a robust ear that nicks well andyield several dozen DH₁ seeds when selfed.

It is anticipated that that these tiller induction methods can be usedin conjunction with DH methods to dramatically increase the likelihoodof recovering DH₁ seed from a given DH₀ mother plant. It is anticipatedthat a user can induce a DH₀ plant to form doubled-haploid tillers, eachgenerating ears that nick well with their respective tassels to producedozens of doubled haploid seed. It is expected that one could use thesemethods to generate as many tillers as are necessary to obtain aquantity of DH₁ seed desired by the user.

Example 8. Multibud Induction can be Used in Conjunction with DH Methodsto Rapidly Generate Plants Homozygous for Multiple Traits

Seeds of a diploid maize plant were surface sterilized comprisingimmersion using standard methods of the art and then germinated in vitroin growth media. One of the resulting seedlings was dissected from itsseed two days after germination (embryo axis method). The dissected axiswas then subjected to a multibud induction treatment comprising transferto fresh multibud induction media containing cytokinin in the form of 10mg/L BAP. After seven days in the multibud bud induction media, thetreated seedlings were transferred back to a hormone-free regenerationmedia.

After approximately twenty days, induced multibuds could be seen growingfrom the nodal regions of the stem. These multibuds were dissected fromthe mother plant and transferred to rooting media comprising IBA andIAA. After approximately one week, the multibud-derived plants weretransplanted into 10 inch pots and allowed to grow in a greenhouse untilit was clear that each autonomously-growing multibud-derived shoot hadformed ears and tassels that nicked. Each ear was then pollinated fromthe tassel growing in the same pot and then all plants were allowed togrow in greenhouse conditions until seed set. In each case, themultibud-derived plants produced ears that bore dozens of seed each.

This example reveals that multibuds induced from a single mother plantcan be cultured to produce fertile ears and tassels that nick well andproduce excellent seed set. It is thus anticipated that a user of thesemethods can use multibuds to increase the likelihood of recovering atleast one seed from a given plant.

In one embodiment, the user induces a mother haploid plant subjected tochromosome doubling to a multibud induction treatment to producemultiple doubled-haploid buds. These multibuds can be cultured toproduce DH seed.

In another embodiment, the user subjects a diploid plant containing atleast one desired trait in a heterozygous state to a multibud inductiontreatment to produce several diploid multibuds. These multibuds areseparated from the mother plant and grown to produce tassels and ears.Next, the user pollinates the multibud-derived diploid plants with amaternal haploid inducer to generate haploid offspring, at least one ofwhich contains the desired allele of the trait. The haploid offspringcan then be subjected to a colchicine doubling treatment to produce adoubled haploid plant containing the desired trait in the homozygouscondition. This method has the potential to dramatically increase theefficiency of creating a plant that is homozygous for more than onetrait as the user can induce the formation of many new inflorescencesfrom a single mother plant, thereby increasing the likelihood ofproducing an egg containing the desired traits in a homozygous statefrom a mother plant. Once a haploid plant containing the desired traitsin the homozygous condition is generated, the user can subject the plantto a chromosome doubling treatment to recover a homozygous diploid.

Example 9. Manipulation of Kernels Per Plant in Doubled HaploidPopulations Using the Plant Growth Regulator Paclobutrazol

Doubled Haploid seedlings were planted into soil one day after beingtreated with the haploid doubling agent colchicine and a total of sevendays after germination. Plants of four different germplasm were treatedwith Paczol (2.5% in 60 mL equivalent to 0.4% active ingredientPaclobutrazol) at approximately 37 days after seed imbibition(approximately V11 stage) to form multiple co-dominant ears. All of theplants were hand pollinated for two consecutive days. Plants withco-dominant ears were hand pollinated on two separate ears on each plant(both primary and secondary ears were on the main stem). At thecompletion of the experiment total kernel number was determined perplant. The Table 6 below illustrates the results of untreated andtreated plants in each germplasm population.

TABLE 6 Paczol treatment of Dihaploid Germplasm Populations. Number ofplants Average number Corn DH treated or of kernels per Germplasmuntreated plant Unique Treated, 56 102 Germplasm #1 Unique Not-treated,44 59 Germplasm #1 Unique Treated, 56 63 Germplasm #2 UniqueNot-treated, 44 35 Germplasm #2 Unique Treated, 56 48 Germplasm #3Unique Not-treated, 44 27 Germplasm #3 Unique Treated, 56 49 Germplasm#4 Unique Not-treated, 44 28 Germplasm #4 Overall counts Treated, 224 66Not-treated, 176 37

The number of kernels per plant was nearly doubled upon treatment withPaczol. See FIGS. 4 and 5.

Having illustrated and described the principles of these methods, itshould be apparent to persons skilled in the art that the methods can bemodified in arrangement and detail without departing from suchprinciples. As various modifications could be made in the constructionsherein described and illustrated without departing from the scope of theinvention, it is intended that all matter contained in the foregoingdescription or shown in the accompanying drawings shall be interpretedas illustrative rather than limiting.

Although the materials and methods disclosed herein are described interms of various embodiments and illustrative examples, it will beapparent to those of skill in the art that variations can be applied tothe materials and methods described herein without departing from theconcept, spirit and scope of the invention. All such similar substitutesand modifications apparent to those skilled in the art are deemed to bewithin the spirit, scope and concept of the invention as defined by theappended claims.

The breadth and scope of the present disclosure should not be limited byany of the above-described exemplary embodiments, but should be definedonly in accordance with the following claims and their equivalents.

1. A method of producing co-dominant ears on a haploid maize plant, themethod comprising contacting the haploid maize plant with a plant growthregulator, wherein the haploid maize plant produces co-dominant ears. 2.A method of improving the number of DH₁ seeds harvested from a DH₀ maizeplant, the method comprising contacting the DH₀ maize plant with a plantgrowth regulator at developmental stage V2, V3, V4, V5, V6, V7, V8, V9,V10, V11, V12* and contacting the DH₀ maize plant with a chromosomedoubling agent at any stage of its life cycle, to produce a DH₀ maizeplant that produces at least one DH₁ maize seed and at least twoco-dominant ears.
 3. The method of claim 2, wherein the total number ofDH₁ maize seeds produced by the DH₀ maize plant with at least twoco-dominant ears is greater than the number of DH₁ maize seeds producedby control DH₀ maize plants that exhibit a dominant ear.
 4. The methodof claim 2, wherein the DH₀ maize plant produces a first co-dominant earand a second co-dominant ear and the second co-dominant ear producesmore DH₁ maize seeds than the first co-dominant ear.
 5. The method ofclaim 2, wherein the DH₀ maize plant produces a first co-dominant ear, asecond co-dominant ear, and a third co-dominant ear, and the thirdco-dominant ear produces more DH₁ maize seeds than the first co-dominantear.
 6. The method of claim 2, further comprising genotyping the DH₀maize plant prior to contacting the DH₀ maize plant with the plantgrowth regulator or the chromosome doubling agent.
 7. The method ofclaim 2, further comprising obtaining DH₁ maize seeds from the DH₀ maizeplant.
 8. The method of claim 7, further comprising genotyping the DH₁maize seeds obtained from the DH₀ maize plant or genotyping a plantgrown from the DH₁ maize seeds.
 9. The method of claim 8, furthercomprising growing a DH₁ maize seed selected based on the genotyping.10. The method of claim 2, wherein the method results in a DE₄ doublingefficiency of at least about 15%, results in a DE₂₀ doubling efficiencyof at least about 15%, results in a DE₃₀ doubling efficiency of at leastabout 15%, and/or results in a DE₅₀ doubling efficiency of at leastabout 15%.
 11. The method of claim 1, wherein the plant growth regulatoris selected from the group consisting of plant hormones, gibberellicacid inhibitors, cytokinins, and any combination thereof.
 12. The methodof claim 11, wherein the plant growth regulator is a gibberellic acidinhibitor.
 13. The method of claim 12, wherein the gibberellic acidinhibitor is selected from the group comprising chlormequat-CL,mepiquat-CL, AMO-1618, clorphonium-C1, tetcylacis, ancymidol,flurprimidol, paclobutrazol, uniconazole-P, inabenfide, prohexadione-CA,trinexapac-ethyl, daminozide, exo-16,17-, and dihydro-GA5-13-acetate.14. The method of claim 1, wherein the plant is contacted with the plantgrowth regulator by drenching, gassing, injecting, or spraying.
 15. Themethod of claim 2, wherein the DH₀ maize plant is contacted with thechromosome doubling agent before it is contacted with the plant growthregulator.
 16. The method of claim 2, wherein the DH₀ maize plant iscontacted with the chromosome doubling agent after it is contacted withthe plant growth regulator.
 17. The method of claim 2, wherein the DH₀maize plant is contacted with the chromosome doubling agent within 1minute, 5 minutes, 15 minutes, 30 minutes, 1 hour, 2 hours, 3 hours, 6hours, 12 hours, or 24 hours before or after contact with the plantgrowth regulator.
 18. The method of claim 17, wherein the chromosomedoubling agent and the plant growth regulator are contacted with the DH₀maize plant at the same time.
 19. The method of claim 1, wherein themaize plant is contacted with the plant growth regulator atdevelopmental stage V4, V5, or V6.
 20. The method of claim 1, whereinthe maize plant is contacted with the plant growth regulator atdevelopmental stage V6, V7, V8, V9, or V10.
 21. The method of claim 2,wherein three or more, four or more, or five or more co-dominant earsare produced.
 22. An elite haploid maize plant comprising at least twoco-dominant ears.
 23. The elite maize plant of claim 22, wherein atleast one of the co-dominant ears comprises a doubled haploid embryo.24. A DH₀ maize plant comprising at least two co-dominant ears, whereinat least one of the co-dominant ears comprises a doubled haploid embryo.25. An elite haploid maize plant comprising at least two co-dominantears, made by the method of claim 1.